Gene detail

Detailed information of OS493_014177-T1 in Lophelia pertusa

Genomic Location: scaffold_40:118739...121931
NR annotation: KAJ7373036.1, Inward rectifier potassium channel [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63252	Inward rectifier potassium channel 2 OS=Homo sapiens OX=9606 GN=KCNJ2 PE=1 SV=1
P63253	Inward rectifier potassium channel 2 OS=Macaca mulatta OX=9544 GN=KCNJ2 PE=2 SV=1
P35561	Inward rectifier potassium channel 2 OS=Mus musculus OX=10090 GN=Kcnj2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001013 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01007 all species →	IRK	Inward rectifier potassium channel transmembrane domain	Domain	Interproscan
PF17655 all species →	IRK_C	Inward rectifier potassium channel C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016449 all species →	Family	Potassium channel, inwardly rectifying, Kir	Interproscan
IPR040445 all species →	Domain	Potassium channel, inwardly rectifying, transmembrane domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013518 all species →	Homologous_superfamily	Potassium channel, inwardly rectifying, Kir, cytoplasmic	Interproscan
IPR041647 all species →	Domain	Inward rectifier potassium channel, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11767 all species →	INWARD RECTIFIER POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005242 all species →	Molecular Function	inward rectifier potassium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0034765 all species →	Biological Process	regulation of monoatomic ion transmembrane transport	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014177-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014177-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

84TPM > 0

7Conditions

10.9Max TPM

0.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	1.01	4.12
polyp at pH7 6	18	12	0.91	3.84
coral polyp · control treatment	16	11	0.73	3.42
coral polyp · oil and dispersant treatment	16	14	0.46	2.13
coral polyp · oil treatment	16	12	0.53	3.48
coral polyp · dispersant treatment	16	14	1.07	10.93
Polyp	10	8	0.62	3.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.12
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.