Gene detail

Detailed information of OS493_014180-T1 in Lophelia pertusa

Genomic Location: scaffold_40:141494...144915
NR annotation: KAJ7373037.1, F-actin-capping protein subunit alpha [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01518	Adenylyl cyclase-associated protein 1 OS=Homo sapiens OX=9606 GN=CAP1 PE=1 SV=5
Q5R8B4	Adenylyl cyclase-associated protein 1 OS=Pongo abelii OX=9601 GN=CAP1 PE=2 SV=3
Q08163	Adenylyl cyclase-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Cap1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01213 all species →	CAP_N	Adenylate cyclase associated (CAP) N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036222 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, N-terminal domain superfamily	Interproscan
IPR013992 all species →	Domain	Adenylate cyclase-associated CAP, N-terminal	Interproscan
IPR001837 all species →	Family	Adenylate cyclase-associated CAP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10652 all species →	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0008179 all species →	Molecular Function	adenylate cyclase binding	Interproscan
GO:0019933 all species →	Biological Process	cAMP-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014180-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014180-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

57.5Max TPM

18.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.94	31.92
polyp at pH7 6	18	18	15.44	26.16
coral polyp · control treatment	16	16	19.88	35.11
coral polyp · oil and dispersant treatment	16	16	14.64	26.63
coral polyp · oil treatment	16	16	18.54	32.76
coral polyp · dispersant treatment	16	16	16.60	30.93
Polyp	10	10	25.35	57.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.21
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.69
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.62
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.48
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.78
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.99
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.97
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.63
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.26
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.28
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.82
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.84
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.88
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	57.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	38.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	35.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.