Detailed information of OS493_014203-T1 in Lophelia pertusa

Genomic Location: scaffold_40:464024...471456
NR annotation: KAJ7373057.1, hypothetical protein OS493_014203 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P10881Lupus La protein homolog OS=Bos taurus OX=9913 GN=SSB PE=2 SV=2
P05455Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P38656Lupus La protein homolog OS=Rattus norvegicus OX=10116 GN=Ssb PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002938 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05383
all species →		LaLa domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR006630
all species →		DomainLa-type HTH domainInterproscan
IPR002344
all species →		FamilyLupus La proteinInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR045180
all species →		FamilyLa domain containing proteinInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792
all species →		LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006396
all species →		Biological ProcessRNA processingInterproscan
GO:1990904
all species →		Cellular Componentribonucleoprotein complexInterproscan
GO:0003729
all species →		Molecular FunctionmRNA bindingInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014203-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014203-T1 global co-expression network
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