Gene detail

Detailed information of OS493_014234-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1001477...1003293
NR annotation: KAJ7373087.1, hypothetical protein OS493_014234 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8RQV0	Isomaltosyltransferase OS=Sporosarcina globispora OX=1459 GN=ctsY PE=1 SV=1
Q9F234	Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens OX=1425 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006976 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR051816 all species →	Family	Glycosyl Hydrolase Family 31	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43863 all species →	HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G03140)-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_014234-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014234-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014234-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

735.2Max TPM

149.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	114.57	352.90
polyp at pH7 6	18	18	124.28	256.14
coral polyp · control treatment	16	16	178.33	599.41
coral polyp · oil and dispersant treatment	16	16	134.55	455.59
coral polyp · oil treatment	16	16	226.87	568.20
coral polyp · dispersant treatment	16	16	143.23	620.01
Polyp	10	10	126.34	735.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	352.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	337.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	287.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	273.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.22
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	256.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	250.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	233.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	219.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	132.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	130.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	116.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.60
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	599.41
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	557.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	190.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	178.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	173.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	166.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	166.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	166.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	151.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	455.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	363.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	278.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.49
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.78
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	100.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	568.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	552.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	527.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	390.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	359.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	277.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	259.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	172.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	80.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	620.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	325.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	234.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	195.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	187.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	735.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	280.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	66.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	58.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	35.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	29.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.53

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.