Gene detail

Detailed information of OS493_014256-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1282500...1284370
NR annotation: KAJ7373108.1, 28S ribosomal protein S14, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CR88	Small ribosomal subunit protein uS14m OS=Mus musculus OX=10090 GN=Mrps14 PE=1 SV=1
O60783	Small ribosomal subunit protein uS14m OS=Homo sapiens OX=9606 GN=MRPS14 PE=1 SV=1
Q6B860	Small ribosomal subunit protein uS14m OS=Bos taurus OX=9913 GN=MRPS14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009186 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00253 all species →	Ribosomal_S14	Ribosomal protein S14p/S29e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001209 all species →	Family	Small ribosomal subunit protein uS14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19836 all species →	30S RIBOSOMAL PROTEIN S14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02954	RP-S14, MRPS14, rpsN; small subunit ribosomal protein S14	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014256-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

45.3Max TPM

14.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.39	20.11
polyp at pH7 6	18	18	10.74	17.89
coral polyp · control treatment	16	16	17.76	45.29
coral polyp · oil and dispersant treatment	16	16	21.92	42.34
coral polyp · oil treatment	16	16	15.68	20.67
coral polyp · dispersant treatment	16	16	10.14	16.87
Polyp	10	10	13.08	32.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.49
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.33
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.01
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.04
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.85
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.