Detailed information of OS493_014262-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1497524...1500103
NR annotation: KAJ7373114.1, Rap1 GTPase-GDP dissociation stimulator 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O93614Rap1 GTPase-GDP dissociation stimulator 1-A OS=Xenopus laevis OX=8355 GN=rap1gds1-a PE=1 SV=1
Q04173Rap1 GTPase-GDP dissociation stimulator 1 OS=Bos taurus OX=9913 GN=RAP1GDS1 PE=1 SV=2
P52306Rap1 GTPase-GDP dissociation stimulator 1 OS=Homo sapiens OX=9606 GN=RAP1GDS1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005265 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00514
all species →		ArmArmadillo/beta-catenin-like repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR000225
all species →		RepeatArmadilloInterproscan
IPR040144
all species →		FamilyRap1 GTPase-GDP dissociation stimulator 1Interproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10957
all species →		RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0043547
all species →		Biological Processpositive regulation of GTPase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014262-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014262-T1 global co-expression network
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