Gene detail

Detailed information of OS493_014280-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1661311...1665254
NR annotation: KAJ7373132.1, hypothetical protein OS493_014280 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y2I7	1-phosphatidylinositol 3-phosphate 5-kinase OS=Homo sapiens OX=9606 GN=PIKFYVE PE=1 SV=3
Q9Z1T6	1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus OX=10090 GN=Pikfyve PE=1 SV=3
O96838	Putative 1-phosphatidylinositol 3-phosphate 5-kinase OS=Drosophila melanogaster OX=7227 GN=fab1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002213 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_014280-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR043548 all species →	Family	1-phosphatidylinositol-3phosphate-5-kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46715 all species →	1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000285 all species →	Molecular Function	1-phosphatidylinositol-3-phosphate 5-kinase activity	Interproscan
GO:0012506 all species →	Cellular Component	vesicle membrane	Interproscan
GO:0030593 all species →	Biological Process	neutrophil chemotaxis	Interproscan
GO:0031410 all species →	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032438 all species →	Biological Process	melanosome organization	Interproscan
GO:0052810 all species →	Molecular Function	1-phosphatidylinositol-5-kinase activity	Interproscan
GO:0090385 all species →	Biological Process	phagosome-lysosome fusion	Interproscan
GO:1903426 all species →	Biological Process	regulation of reactive oxygen species biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014280-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014280-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

7.4Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.38	7.36
polyp at pH7 6	18	15	2.28	5.18
coral polyp · control treatment	16	16	2.75	6.62
coral polyp · oil and dispersant treatment	16	15	1.78	5.90
coral polyp · oil treatment	16	15	2.28	5.03
coral polyp · dispersant treatment	16	15	2.72	6.52
Polyp	10	8	0.46	1.58

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.45
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.06
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.