Gene detail

Detailed information of OS493_014290-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1745280...1747407
NR annotation: KAJ7373142.1, hypothetical protein OS493_014290 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RJU3	Dynein axonemal assembly factor 19 OS=Xenopus tropicalis OX=8364 GN=dnaaf19 PE=2 SV=2
Q6DGB6	Dynein axonemal assembly factor 19 OS=Danio rerio OX=7955 GN=dnaaf19 PE=1 SV=1
Q9D9P2	Dynein axonemal assembly factor 19 OS=Mus musculus OX=10090 GN=Dnaaf19 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008934 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15867 all species →	Dynein_attach_N	Dynein attachment factor N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031733 all species →	Domain	Dynein attachment factor, N-terminal	Interproscan
IPR042422 all species →	Family	Coiled-coil domain-containing protein 103	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28572 all species →	COILED-COIL DOMAIN-CONTAINING PROTEIN 103	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003351 all species →	Biological Process	epithelial cilium movement involved in extracellular fluid movement	Interproscan
GO:0007368 all species →	Biological Process	determination of left/right symmetry	Interproscan
GO:0036157 all species →	Cellular Component	outer dynein arm	Interproscan
GO:0036159 all species →	Biological Process	inner dynein arm assembly	Interproscan
GO:0070286 all species →	Biological Process	axonemal dynein complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014290-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014290-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

15.2Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.12	4.38
polyp at pH7 6	18	14	2.31	6.36
coral polyp · control treatment	16	16	4.64	15.20
coral polyp · oil and dispersant treatment	16	15	3.42	9.21
coral polyp · oil treatment	16	15	3.02	6.77
coral polyp · dispersant treatment	16	14	2.70	7.23
Polyp	10	9	3.30	5.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.21
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.71
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.68
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.