Detailed information of OS493_014295-T1 in Lophelia pertusa

Genomic Location: scaffold_40:1786765...1788830
NR annotation: KAJ7373147.1, RNA-splicing factor [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NXE8Pre-mRNA-splicing factor CWC25 homolog OS=Homo sapiens OX=9606 GN=CWC25 PE=1 SV=1
Q9DBF7Pre-mRNA-splicing factor CWC25 homolog OS=Mus musculus OX=10090 GN=Cwc25 PE=2 SV=2
P0CM99Pre-mRNA-splicing factor CWC25 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CWC25 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007061 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12542
all species →		CWC25Pre-mRNA splicing factorFamilyInterproscan
PF10197
all species →		Cir_NN-terminal domain of CBF1 interacting co-repressor CIRDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019339
all species →		DomainCBF1-interacting co-repressor CIR, N-terminal domainInterproscan
IPR051376
all species →		FamilyPre-mRNA-splicing factor CWC25Interproscan
IPR022209
all species →		FamilyPre-mRNA splicing factorInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16196
all species →		CELL CYCLE CONTROL PROTEIN CWF25Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005684
all species →		Cellular ComponentU2-type spliceosomal complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014295-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014295-T1 global co-expression network
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