Gene detail

Detailed information of OS493_014315-T1 in Lophelia pertusa

Genomic Location: scaffold_40:2024611...2028178
NR annotation: KAJ7373167.1, diphthine--ammonia ligase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RV01	Diphthine--ammonia ligase OS=Danio rerio OX=7955 GN=dph6 PE=2 SV=1
Q2HJF5	Diphthine--ammonia ligase OS=Bos taurus OX=9913 GN=DPH6 PE=2 SV=1
Q7L8W6	Diphthine--ammonia ligase OS=Homo sapiens OX=9606 GN=DPH6 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01902 all species →	Diphthami_syn_2	Diphthamide synthase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030662 all species →	Family	Diphthine--ammonia ligase/Uncharacterised protein MJ0570	Interproscan
IPR002761 all species →	Domain	Diphthamide synthase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12196 all species →	DOMAIN OF UNKNOWN FUNCTION 71 DUF71 -CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017178 all species →	Molecular Function	diphthine-ammonia ligase activity	Interproscan
GO:0017183 all species →	Biological Process	protein histidyl modification to diphthamide	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014315-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014315-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

12.6Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.74	8.04
polyp at pH7 6	18	14	3.92	8.28
coral polyp · control treatment	16	16	4.45	8.64
coral polyp · oil and dispersant treatment	16	16	2.80	5.20
coral polyp · oil treatment	16	15	3.86	9.44
coral polyp · dispersant treatment	16	14	2.65	7.54
Polyp	10	8	3.93	12.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.64
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.77
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.