Detailed information of OS493_014317-T1 in Lophelia pertusa

Genomic Location: scaffold_40:2037170...2040820
NR annotation: KAJ7373169.1, Vacuolar protein-sorting-associated protein 25 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6NWF4Vacuolar protein-sorting-associated protein 25 OS=Danio rerio OX=7955 GN=vps25 PE=2 SV=2
Q55GD9Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium discoideum OX=44689 GN=vps25 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008224 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05871
all species →		ESCRT-IIESCRT-II complex subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR008570
all species →		FamilyESCRT-II complex, Vps25 subunitInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13149
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000814
all species →		Cellular ComponentESCRT II complexInterproscan
GO:0071985
all species →		Biological Processmultivesicular body sorting pathwayInterproscan
GO:0005198
all species →		Molecular Functionstructural molecule activityInterproscan
GO:0042803
all species →		Molecular Functionprotein homodimerization activityInterproscan
GO:0043328
all species →		Biological Processprotein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014317-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014317-T1 global co-expression network
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