Gene detail

Detailed information of OS493_014333-T1 in Lophelia pertusa

Genomic Location: scaffold_40:2207881...2222177
NR annotation: KAJ7373185.1, hypothetical protein OS493_014333 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002534 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_014333-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR026652 all species →	Family	Centrosomal protein of 128kDa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46657 all species →	CENTROSOMAL PROTEIN OF 128 KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000922 all species →	Cellular Component	spindle pole	Interproscan
GO:0005814 all species →	Cellular Component	centriole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014333-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014333-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

26.5Max TPM

10.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.23	16.97
polyp at pH7 6	18	18	11.53	17.61
coral polyp · control treatment	16	16	11.82	24.68
coral polyp · oil and dispersant treatment	16	16	6.97	23.49
coral polyp · oil treatment	16	16	10.33	20.28
coral polyp · dispersant treatment	16	16	9.75	16.86
Polyp	10	10	12.66	26.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.28
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	26.47
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.17
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.22
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.