Gene detail

Detailed information of OS493_014383-T1 in Lophelia pertusa

Genomic Location: scaffold_41:284783...286416
NR annotation: KAJ7361743.1, 60S acidic ribosomal protein P1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q56K14	Large ribosomal subunit protein P1 OS=Bos taurus OX=9913 GN=RPLP1 PE=3 SV=1
P05386	Large ribosomal subunit protein P1 OS=Homo sapiens OX=9606 GN=RPLP1 PE=1 SV=1
P19944	Large ribosomal subunit protein P1 OS=Rattus norvegicus OX=10116 GN=Rplp1 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00428 all species →	Ribosomal_60s	60s Acidic ribosomal protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027534 all species →	Family	Large ribosomal subunit protein P1/P2	Interproscan
IPR038716 all species →	Homologous_superfamily	Large ribosomal subunit protein P1/P2, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45696 all species →	60S ACIDIC RIBOSOMAL PROTEIN P1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006414 all species →	Biological Process	translational elongation	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0030295 all species →	Molecular Function	protein kinase activator activity	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014383-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014383-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

16,706.4Max TPM

3,261.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2,803.06	3,479.18
polyp at pH7 6	18	18	2,606.37	3,428.17
coral polyp · control treatment	16	16	3,386.02	6,330.30
coral polyp · oil and dispersant treatment	16	16	2,839.65	7,579.86
coral polyp · oil treatment	16	16	3,797.31	7,290.24
coral polyp · dispersant treatment	16	16	3,745.37	16,706.37
Polyp	10	10	4,109.18	7,167.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,479.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,424.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,126.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,122.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,058.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,013.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,920.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,884.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,743.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,730.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,706.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,669.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,557.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,542.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,535.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,452.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,254.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,234.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,428.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,405.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,922.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,883.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,764.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,759.68
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,756.23
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,702.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,556.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,478.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,407.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,402.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,394.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,367.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,356.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,336.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,001.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,989.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6,330.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,757.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,648.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,618.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,583.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,365.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,348.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,289.71
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,017.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,935.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,735.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,553.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,241.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,910.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,642.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,197.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7,579.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,040.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,903.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,587.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,417.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,295.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,665.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,298.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,200.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,050.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,998.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,823.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,773.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,662.92
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,638.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,498.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7,290.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,857.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,926.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,492.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,407.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,354.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,245.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,716.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,692.54
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,458.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,255.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,740.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,657.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,925.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,897.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,840.78
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16,706.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13,771.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,263.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,567.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,234.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,228.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,207.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,118.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,081.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,041.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,774.26
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,764.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,709.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,582.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,561.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,312.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7,167.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4,497.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4,421.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4,211.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4,067.41
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3,928.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3,562.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3,362.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3,177.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2,695.92

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.