Gene detail

Detailed information of OS493_014392-T1 in Lophelia pertusa

Genomic Location: scaffold_41:335950...342917
NR annotation: KAJ7361752.1, Dynactin subunit 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A4X1TB62	Dynactin subunit 4 OS=Sus scrofa OX=9823 GN=DCTN4 PE=1 SV=1
Q9UJW0	Dynactin subunit 4 OS=Homo sapiens OX=9606 GN=DCTN4 PE=1 SV=1
Q5R7U7	Dynactin subunit 4 OS=Pongo abelii OX=9601 GN=DCTN4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003870 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05502 all species →	Dynactin_p62	Dynactin p62 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008603 all species →	Family	Dynactin subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13034 all species →	DYNACTIN P62 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005869 all species →	Cellular Component	dynactin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10426	DCTN4; dynactin 4	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014392-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

39.3Max TPM

17.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.85	20.44
polyp at pH7 6	18	18	14.08	20.81
coral polyp · control treatment	16	16	22.01	39.28
coral polyp · oil and dispersant treatment	16	16	19.44	38.09
coral polyp · oil treatment	16	16	19.81	29.46
coral polyp · dispersant treatment	16	16	15.11	31.24
Polyp	10	10	17.58	25.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.34
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.80
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.75
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.43
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.90
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.45
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.15
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.27
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.