Gene detail

Detailed information of OS493_014397-T1 in Lophelia pertusa

Genomic Location: scaffold_41:354430...358006
NR annotation: KAJ7361757.1, hypothetical protein OS493_014397 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BSY0	Aspartyl/asparaginyl beta-hydroxylase OS=Mus musculus OX=10090 GN=Asph PE=1 SV=1
Q12797	Aspartyl/asparaginyl beta-hydroxylase OS=Homo sapiens OX=9606 GN=ASPH PE=1 SV=3
Q28056	Aspartyl/asparaginyl beta-hydroxylase OS=Bos taurus OX=9913 GN=ASPH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005387 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05118 all species →	Asp_Arg_Hydrox	Aspartyl/Asparaginyl beta-hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR039038 all species →	Family	Aspartyl/asparaginyl beta-hydroxylase family	Interproscan
IPR007803 all species →	Domain	Aspartyl/asparaginy/proline hydroxylase	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR027443 all species →	Homologous_superfamily	Isopenicillin N synthase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12366 all species →	ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0042264 all species →	Biological Process	peptidyl-aspartic acid hydroxylation	Interproscan
GO:0062101 all species →	Molecular Function	peptidyl-aspartic acid 3-dioxygenase activity	Interproscan
GO:0018193 all species →	Biological Process	peptidyl-amino acid modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014397-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014397-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

85.1Max TPM

10.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.22	13.86
polyp at pH7 6	18	18	11.13	19.73
coral polyp · control treatment	16	16	14.45	85.08
coral polyp · oil and dispersant treatment	16	16	9.49	56.91
coral polyp · oil treatment	16	16	8.25	13.81
coral polyp · dispersant treatment	16	16	7.85	13.00
Polyp	10	10	8.66	17.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.82
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.22
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.24
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.65
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.15
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.42
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.99
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.36
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.46
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.