Gene detail

Detailed information of OS493_014474-T1 in Lophelia pertusa

Genomic Location: scaffold_41:994080...997781
NR annotation: KAJ7361833.1, hypothetical protein OS493_014474 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28GF8	Transmembrane protein 205 OS=Xenopus tropicalis OX=8364 GN=tmem205 PE=2 SV=1
Q6GPW4	Transmembrane protein 205 OS=Xenopus laevis OX=8355 GN=tmem205 PE=2 SV=1
A1L2F6	Transmembrane protein 205 OS=Danio rerio OX=7955 GN=tmem205 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006500 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13664 all species →	DUF4149	Domain of unknown function (DUF4149)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025423 all species →	Domain	Domain of unknown function DUF4149	Interproscan
IPR053009 all species →	Family	Xanthocillin Biosynthesis-Associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23241 all species →	LATE EMBRYOGENESIS ABUNDANT PLANTS LEA-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_014474-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014474-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014474-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

90TPM > 0

7Conditions

1,146.1Max TPM

80.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	11	0.92	3.66
polyp at pH7 6	18	7	1.04	6.32
coral polyp · control treatment	16	16	24.94	234.96
coral polyp · oil and dispersant treatment	16	16	44.59	369.12
coral polyp · oil treatment	16	16	6.06	20.57
coral polyp · dispersant treatment	16	16	476.61	1,146.13
Polyp	10	8	3.31	21.09

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	234.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.47
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.68
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	369.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.49
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,146.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,070.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	979.36
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	934.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	744.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	698.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	481.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	448.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	442.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	189.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.36
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.