Gene detail

Detailed information of OS493_014486-T1 in Lophelia pertusa

Genomic Location: scaffold_41:1129445...1131657
NR annotation: KAJ7361844.1, cAMP-responsive element-binding protein-like 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60519	cAMP-responsive element-binding protein-like 2 OS=Homo sapiens OX=9606 GN=CREBL2 PE=1 SV=1
Q5BJU6	cAMP-responsive element-binding protein-like 2 OS=Rattus norvegicus OX=10116 GN=Crebl2 PE=2 SV=1
A4IGK3	cAMP-responsive element-binding protein-like 2 OS=Xenopus tropicalis OX=8364 GN=crebl2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009633 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07716 all species →	bZIP_2	Basic region leucine zipper	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR039250 all species →	Family	CREBL2/REPTOR-BP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21051 all species →	CAMP-RESPONSIVE ELEMENT-BINDING PROTEIN-LIKE 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014486-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014486-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

609.7Max TPM

149.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	46.63	74.42
polyp at pH7 6	18	18	52.55	80.09
coral polyp · control treatment	16	16	129.18	301.81
coral polyp · oil and dispersant treatment	16	16	272.12	543.63
coral polyp · oil treatment	16	16	117.53	194.44
coral polyp · dispersant treatment	16	16	374.42	609.69
Polyp	10	10	30.78	54.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.47
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.04
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.09
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	301.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	244.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	175.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	131.66
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	125.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	543.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	459.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	361.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	356.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	282.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	279.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	276.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	270.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	254.68
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	235.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	214.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	161.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	126.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	194.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	174.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	161.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	149.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	140.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.13
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	609.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	529.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	522.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	494.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	457.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	427.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	415.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	409.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	406.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	378.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	345.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	336.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	334.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.71
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	54.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	46.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	42.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	24.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.