Gene detail

Detailed information of OS493_014499-T1 in Lophelia pertusa

Genomic Location: scaffold_41:1227522...1228097
NR annotation: KAJ7361856.1, hypothetical protein OS493_014499 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009564 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10171 all species →	Tim29	Translocase of the Inner Mitochondrial membrane 29	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019322 all species →	Family	Mitochondrial import inner membrane translocase subunit Tim29	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21435 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042721 all species →	Cellular Component	TIM22 mitochondrial import inner membrane insertion complex	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014499-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014499-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

47.5Max TPM

7.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.89	11.44
polyp at pH7 6	18	18	8.69	21.19
coral polyp · control treatment	16	16	10.18	40.17
coral polyp · oil and dispersant treatment	16	16	7.92	47.47
coral polyp · oil treatment	16	16	7.43	11.26
coral polyp · dispersant treatment	16	16	2.57	6.89
Polyp	10	9	9.56	19.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.83
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.51
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.42
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.