Gene detail

Detailed information of OS493_014551-T1 in Lophelia pertusa

Genomic Location: scaffold_41:1629776...1635361
NR annotation: KAJ7361905.1, Tribbles 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92519	Tribbles homolog 2 OS=Homo sapiens OX=9606 GN=TRIB2 PE=1 SV=1
Q5GLH2	Tribbles homolog 2 OS=Bos taurus OX=9913 GN=TRIB2 PE=2 SV=1
Q28283	Tribbles homolog 2 OS=Canis lupus familiaris OX=9615 GN=TRIB2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008469 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR024104 all species →	Family	Pseudokinase tribbles family/serine-threonine-protein kinase 40	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22961 all species →	SER/THR PROTEIN KINASE-TRB	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031434 all species →	Molecular Function	mitogen-activated protein kinase kinase binding	Interproscan
GO:0032436 all species →	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0043405 all species →	Biological Process	regulation of MAP kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08814	TRIB1_2; tribbles homolog 1/2	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014551-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

842.7Max TPM

228.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	87.02	116.48
polyp at pH7 6	18	18	122.40	196.57
coral polyp · control treatment	16	16	215.79	491.52
coral polyp · oil and dispersant treatment	16	16	391.70	831.25
coral polyp · oil treatment	16	16	172.41	250.96
coral polyp · dispersant treatment	16	16	464.45	842.69
Polyp	10	10	139.61	285.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	106.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	99.20
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	95.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.38
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	196.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	190.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.33
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	133.44
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.55
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	99.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	491.52
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	337.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	318.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	286.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	280.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	254.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	195.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	169.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	166.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	155.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	138.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	136.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	831.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	537.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	502.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	466.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	435.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	431.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	431.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	424.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	400.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	385.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	292.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	268.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	255.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	251.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	193.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	250.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	249.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	227.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	141.59
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	116.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	842.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	814.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	555.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	548.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	523.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	504.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	452.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	434.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	423.48
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	419.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	394.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	384.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	331.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	330.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	266.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	285.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	199.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	178.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	143.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	142.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	114.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	97.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	89.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	83.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	62.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.