Gene detail

Detailed information of OS493_014556-T1 in Lophelia pertusa

Genomic Location: scaffold_41:1696918...1711774
NR annotation: KAJ7361910.1, hypothetical protein OS493_014556 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000432 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04089 all species →	BRICHOS	BRICHOS domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051772 all species →	Family	Gastrokine	Interproscan
IPR007084 all species →	Domain	BRICHOS domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16483 all species →	GASTROKINE 1	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_014556-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014556-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014556-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

179.7Max TPM

10.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.12	22.36
polyp at pH7 6	18	17	10.79	33.58
coral polyp · control treatment	16	16	21.76	179.70
coral polyp · oil and dispersant treatment	16	15	7.60	19.63
coral polyp · oil treatment	16	16	11.37	63.34
coral polyp · dispersant treatment	16	16	5.98	19.44
Polyp	10	9	5.71	18.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.36
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.93
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.58
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.93
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.75
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.