Gene detail

Detailed information of OS493_014571-T1 in Lophelia pertusa

Genomic Location: scaffold_41:1917331...1920509
NR annotation: KAJ7361924.1, Androgen-induced protein 1 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002169 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04750 all species →	Far-17a_AIG1	FAR-17a/AIG1-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006838 all species →	Family	ADTRP/AIG1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10989 all species →	ANDROGEN-INDUCED PROTEIN 1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014571-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014571-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

22.8Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.88	12.01
polyp at pH7 6	18	14	6.02	12.53
coral polyp · control treatment	16	16	10.91	18.30
coral polyp · oil and dispersant treatment	16	16	8.84	22.78
coral polyp · oil treatment	16	16	10.97	19.53
coral polyp · dispersant treatment	16	16	7.88	14.78
Polyp	10	9	4.84	11.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.01
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.30
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.02
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.98
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.27
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.32
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.06
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.