Gene detail

Detailed information of OS493_014649-T1 in Lophelia pertusa

Genomic Location: scaffold_42:222578...224323
NR annotation: KAJ7334339.1, hypothetical protein OS493_014649 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001343 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13640 all species →	2OG-FeII_Oxy_3	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR044862 all species →	Domain	Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35169 all species →	FE2OG DIOXYGENASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014649-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014649-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

9.9Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.92	5.62
polyp at pH7 6	18	17	2.88	4.72
coral polyp · control treatment	16	16	3.24	9.90
coral polyp · oil and dispersant treatment	16	16	2.38	6.53
coral polyp · oil treatment	16	16	2.98	5.43
coral polyp · dispersant treatment	16	15	1.22	2.67
Polyp	10	9	3.14	4.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.23
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.12
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.74
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.67
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.