Gene detail

Detailed information of OS493_014671-T1 in Lophelia pertusa

Genomic Location: scaffold_42:511798...514929
NR annotation: KAJ7334360.1, hypothetical protein OS493_014671 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006558 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_014671-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039656 all species →	Family	Synergin gamma	Interproscan
IPR000261 all species →	Domain	EH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15463 all species →	AP1 GAMMA SUBUNIT BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030130 all species →	Cellular Component	clathrin coat of trans-Golgi network vesicle	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014671-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014671-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

23.0Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.93	12.41
polyp at pH7 6	18	18	7.00	10.09
coral polyp · control treatment	16	16	9.73	22.96
coral polyp · oil and dispersant treatment	16	16	6.55	11.92
coral polyp · oil treatment	16	16	9.35	14.59
coral polyp · dispersant treatment	16	16	5.70	12.79
Polyp	10	10	4.31	7.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.68
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.99
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.12
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.04
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.76
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.86
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.