Gene detail

Detailed information of OS493_014685-T1 in Lophelia pertusa

Genomic Location: scaffold_42:629325...632657
NR annotation: KAJ7334374.1, hypothetical protein OS493_014685 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFN1	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis OX=8364 GN=ndufaf3 PE=2 SV=1
Q9JKL4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus OX=10090 GN=Ndufaf3 PE=1 SV=1
Q2HJI2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Bos taurus OX=9913 GN=NDUFAF3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007809 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04430 all species →	DUF498	Protein of unknown function (DUF498/DUF598)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034095 all species →	Family	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	Interproscan
IPR036748 all species →	Homologous_superfamily	MTH938-like superfamily	Interproscan
IPR007523 all species →	Family	NDUFAF3/Mth938 domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21192 all species →	NUCLEAR PROTEIN E3-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032981 all species →	Biological Process	mitochondrial respiratory chain complex I assembly	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09008	NDUFAF3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014685-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.7Max TPM

4.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.70	9.54
polyp at pH7 6	18	17	5.53	10.44
coral polyp · control treatment	16	16	6.51	20.68
coral polyp · oil and dispersant treatment	16	16	3.97	12.66
coral polyp · oil treatment	16	16	6.53	9.04
coral polyp · dispersant treatment	16	15	3.30	8.07
Polyp	10	8	2.91	8.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.48
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.