Gene detail

Detailed information of OS493_014719-T1 in Lophelia pertusa

Genomic Location: scaffold_42:930589...934846
NR annotation: KAJ7334408.1, hypothetical protein OS493_014719 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010186 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15067 all species →	FAM124	FAM124 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029380 all species →	Family	FAM124	Interproscan
IPR046365 all species →	Domain	FAM124 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14715 all species →	FAM124 DOMAIN-CONTAINING PROTEIN-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_014719-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014719-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014719-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

34.5Max TPM

18.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.06	34.52
polyp at pH7 6	18	18	21.96	29.56
coral polyp · control treatment	16	16	21.23	30.96
coral polyp · oil and dispersant treatment	16	16	16.57	26.88
coral polyp · oil treatment	16	16	19.57	31.12
coral polyp · dispersant treatment	16	16	12.76	20.57
Polyp	10	10	13.34	20.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.67
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.02
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.55
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.82
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.46
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.37
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.12
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.93
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.