Detailed information of OS493_014723-T1 in Lophelia pertusa

Genomic Location: scaffold_42:955053...959048
NR annotation: KAJ7334412.1, hypothetical protein OS493_014723 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15477Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
Q6NZR5Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
F4JAA5DExH-box ATP-dependent RNA helicase DExH11 OS=Arabidopsis thaliana OX=3702 GN=SKI2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001225 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13234
all species →		MTR4_beta-barrelMtr4-like, beta-barrel domainDomainInterproscan
PF21408
all species →		MTR4-like_stalkExosome RNA helicase MTR4-like, stalkDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050699
all species →		FamilyRNA/DNA HelicaseInterproscan
IPR025696
all species →		DomainExosome RNA helicase MTR4-like, beta-barrel domainInterproscan
IPR048392
all species →		DomainExosome RNA helicase MTR4-like, stalkInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12131
all species →		ATP-DEPENDENT RNA AND DNA HELICASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003724
all species →		Molecular FunctionRNA helicase activityInterproscan
GO:0006401
all species →		Biological ProcessRNA catabolic processInterproscan
GO:0055087
all species →		Cellular ComponentSki complexInterproscan
GO:0070478
all species →		Biological Processnuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014723-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014723-T1 global co-expression network
TOP