Detailed information of OS493_014743-T1 in Lophelia pertusa

Genomic Location: scaffold_42:1086646...1087707
NR annotation: KAJ7334429.1, High affinity choline transporter 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9JMD7High affinity choline transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc5a7 PE=1 SV=1
Q8BGY9High affinity choline transporter 1 OS=Mus musculus OX=10090 GN=Slc5a7 PE=1 SV=1
Q9GZV3High affinity choline transporter 1 OS=Homo sapiens OX=9606 GN=SLC5A7 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001039 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00474
all species →		SSFSodium:solute symporter familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001734
all species →		FamilySodium/solute symporterInterproscan
IPR052244
all species →		FamilyHigh-affinity choline transporterInterproscan
IPR038377
all species →		Homologous_superfamilySodium/glucose symporter superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45897
all species →		HIGH-AFFINITY CHOLINE TRANSPORTER 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0022857
all species →		Molecular Functiontransmembrane transporter activityInterproscan
GO:0055085
all species →		Biological Processtransmembrane transportInterproscan
GO:0005307
all species →		Molecular Functioncholine:sodium symporter activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0008292
all species →		Biological Processacetylcholine biosynthetic processInterproscan
GO:0015871
all species →		Biological Processcholine transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014743-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014743-T1 global co-expression network
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