Detailed information of OS493_014744-T1 in Lophelia pertusa

Genomic Location: scaffold_42:1087715...1089028
NR annotation: KAJ7334430.1, hypothetical protein OS493_014744 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9VE46High-affinity choline transporter 1 OS=Drosophila melanogaster OX=7227 GN=ChT PE=2 SV=2
O02228High-affinity choline transporter 1 OS=Caenorhabditis elegans OX=6239 GN=cho-1 PE=2 SV=2
Q8UWF0High-affinity choline transporter 1 OS=Torpedo marmorata OX=7788 GN=CHT1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0034553 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_014744-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR038377
all species →		Homologous_superfamilySodium/glucose symporter superfamilyInterproscan
IPR052244
all species →		FamilyHigh-affinity choline transporterInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45897
all species →		HIGH-AFFINITY CHOLINE TRANSPORTER 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005307
all species →		Molecular Functioncholine:sodium symporter activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan
GO:0008292
all species →		Biological Processacetylcholine biosynthetic processInterproscan
GO:0015871
all species →		Biological Processcholine transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_014744-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_014744-T1 global co-expression network
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