Gene detail

Detailed information of OS493_014810-T1 in Lophelia pertusa

Genomic Location: scaffold_42:1661231...1663968
NR annotation: KAJ7334489.1, hypothetical protein OS493_014810 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010389 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17653 all species →	DUF5522	Family of unknown function (DUF5522)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040807 all species →	Family	Protein of unknown function DUF5522	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21037 all species →	39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_014810-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014810-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014810-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

22.9Max TPM

5.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.88	10.54
polyp at pH7 6	18	17	7.12	12.25
coral polyp · control treatment	16	16	5.15	12.56
coral polyp · oil and dispersant treatment	16	15	3.41	7.96
coral polyp · oil treatment	16	16	4.60	9.47
coral polyp · dispersant treatment	16	15	1.72	3.98
Polyp	10	9	9.17	22.88

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.49
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.05
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.76
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.