Gene detail

Detailed information of OS493_014815-T1 in Lophelia pertusa

Genomic Location: scaffold_42:1742848...1746225
NR annotation: KAJ7334494.1, hypothetical protein OS493_014815 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A9JS51	Ciliary microtubule inner protein 2B OS=Xenopus laevis OX=8355 GN=cimip2b PE=2 SV=1
A8E5W8	Ciliary microtubule inner protein 2B OS=Xenopus tropicalis OX=8364 GN=cimip2b PE=2 SV=1
A2RRW4	Ciliary microtubule inner protein 2B OS=Danio rerio OX=7955 GN=cimip2b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007931 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10629 all species →	DUF2475	Protein of unknown function (DUF2475)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018902 all species →	Domain	Ciliary microtubule inner protein 2A-C-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22146 all species →	CAT EYE SYNDROME CRITICAL REGION PROTEIN 6	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_014815-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014815-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014815-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

228.7Max TPM

44.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.53	43.89
polyp at pH7 6	18	18	18.92	45.82
coral polyp · control treatment	16	16	63.60	228.75
coral polyp · oil and dispersant treatment	16	16	69.56	158.58
coral polyp · oil treatment	16	16	50.28	90.79
coral polyp · dispersant treatment	16	16	59.03	125.21
Polyp	10	10	31.13	65.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.02
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.20
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.77
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.68
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	100.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.63
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.52
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.30
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.19
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.94
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.28
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	65.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	46.82
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	42.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.95
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	22.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.19

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.