Gene detail

Detailed information of OS493_014837-T1 in Lophelia pertusa

Genomic Location: scaffold_42:1960854...1981533
NR annotation: KAJ7334514.1, ZZ-type zinc finger-containing protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IYH5	ZZ-type zinc finger-containing protein 3 OS=Homo sapiens OX=9606 GN=ZZZ3 PE=1 SV=1
Q6KAQ7	ZZ-type zinc finger-containing protein 3 OS=Mus musculus OX=10090 GN=Zzz3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004198 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00569 all species →	ZZ	Zinc finger, ZZ type	Domain	Interproscan
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000433 all species →	Domain	Zinc finger, ZZ-type	Interproscan
IPR043145 all species →	Homologous_superfamily	Zinc finger, ZZ-type superfamily	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR037830 all species →	Family	ZZ-type zinc finger-containing protein 3	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22705 all species →	ZINC FINGER, ZZ DOMAIN CONTAINING 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24536	ZZZ3; ZZ-type zinc finger-containing protein 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014837-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

10.8Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.71	6.56
polyp at pH7 6	18	18	3.42	5.90
coral polyp · control treatment	16	16	4.49	10.82
coral polyp · oil and dispersant treatment	16	16	2.47	4.96
coral polyp · oil treatment	16	16	3.51	6.36
coral polyp · dispersant treatment	16	16	3.00	5.67
Polyp	10	9	2.05	4.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.39
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.72
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.94
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.