Gene detail

Detailed information of OS493_014873-T1 in Lophelia pertusa

Genomic Location: scaffold_42:2384226...2385537
NR annotation: KAJ7334549.1, hypothetical protein OS493_014873 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002679 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02188 all species →	GoLoco	GoLoco motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR003109 all species →	Conserved_site	GoLoco motif	Interproscan
IPR052386 all species →	Family	G-protein-signaling modulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45954 all species →	LD33695P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030695 all species →	Molecular Function	GTPase regulator activity	Interproscan
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0001965 all species →	Molecular Function	G-protein alpha-subunit binding	Interproscan
GO:0005092 all species →	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014873-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014873-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

53.4Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	35.65	45.07
polyp at pH7 6	18	18	33.64	53.36
coral polyp · control treatment	16	16	22.33	32.30
coral polyp · oil and dispersant treatment	16	15	10.73	18.62
coral polyp · oil treatment	16	16	24.16	43.86
coral polyp · dispersant treatment	16	16	15.10	33.66
Polyp	10	9	15.06	33.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.07
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.81
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.75
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.21
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.74
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.62
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.02
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.73
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.43
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.37
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.82
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.79
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.77
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.83
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.