Gene detail

Detailed information of OS493_014906-T1 in Lophelia pertusa

Genomic Location: scaffold_42:2673714...2678555
NR annotation: KAJ7334582.1, Neuronal calcium sensor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P62167	Neuronal calcium sensor 1 OS=Gallus gallus OX=9031 GN=NCS1 PE=1 SV=2
P62166	Neuronal calcium sensor 1 OS=Homo sapiens OX=9606 GN=NCS1 PE=1 SV=2
Q8BNY6	Neuronal calcium sensor 1 OS=Mus musculus OX=10090 GN=Ncs1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000387 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR028846 all species →	Family	Recoverin family	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23055 all species →	CALCIUM BINDING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0008048 all species →	Molecular Function	calcium sensitive guanylate cyclase activator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19932	NCS1; neuronal calcium sensor	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014906-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

44.7Max TPM

19.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.01	34.23
polyp at pH7 6	18	18	22.52	31.43
coral polyp · control treatment	16	16	21.05	29.16
coral polyp · oil and dispersant treatment	16	16	13.52	30.93
coral polyp · oil treatment	16	16	25.20	44.65
coral polyp · dispersant treatment	16	16	12.01	23.11
Polyp	10	10	16.10	30.44

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.08
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.47
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.09
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.19
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.56
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.97
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.52
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.98
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.81
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.17
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.