Gene detail

Detailed information of OS493_014919-T1 in Lophelia pertusa

Genomic Location: scaffold_43:207650...212914
NR annotation: KAJ7391990.1, Bromo adjacent y [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TBE0	Bromo adjacent homology domain-containing 1 protein OS=Homo sapiens OX=9606 GN=BAHD1 PE=1 SV=2
Q497V6	Bromo adjacent homology domain-containing 1 protein OS=Mus musculus OX=10090 GN=Bahd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004896 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01426 all species →	BAH	BAH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043151 all species →	Homologous_superfamily	Bromo adjacent homology (BAH) domain superfamily	Interproscan
IPR001025 all species →	Domain	Bromo adjacent homology (BAH) domain	Interproscan
IPR053032 all species →	Family	Bromo adjacent homology domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46576 all species →	BROMO ADJACENT HOMOLOGY DOMAIN-CONTAINING 1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014919-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014919-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.1Max TPM

19.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.92	19.82
polyp at pH7 6	18	18	11.69	18.26
coral polyp · control treatment	16	16	27.56	69.08
coral polyp · oil and dispersant treatment	16	16	23.96	41.08
coral polyp · oil treatment	16	16	18.45	33.07
coral polyp · dispersant treatment	16	16	29.00	55.67
Polyp	10	10	7.68	14.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.46
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.23
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.35
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.55
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.95
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.44
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.86
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.23

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.