Gene detail

Detailed information of OS493_014994-T1 in Lophelia pertusa

Genomic Location: scaffold_43:1842024...1848160
NR annotation: KAJ7392051.1, hypothetical protein OS493_014994 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L0Y2	Neuralized-like protein 4 OS=Xenopus tropicalis OX=8364 GN=neurl4 PE=2 SV=1
Q96JN8	Neuralized-like protein 4 OS=Homo sapiens OX=9606 GN=NEURL4 PE=1 SV=2
Q5NCX5	Neuralized-like protein 4 OS=Mus musculus OX=10090 GN=Neurl4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002554 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07177 all species →	Neuralized	Neuralized	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006573 all species →	Domain	Neuralized homology repeat (NHR) domain	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR037962 all species →	Family	Neuralized	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12429 all species →	NEURALIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_014994-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_014994-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

26.4Max TPM

12.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.85	21.86
polyp at pH7 6	18	18	13.34	20.29
coral polyp · control treatment	16	16	11.70	16.93
coral polyp · oil and dispersant treatment	16	16	9.99	23.02
coral polyp · oil treatment	16	16	12.63	19.08
coral polyp · dispersant treatment	16	16	6.57	14.14
Polyp	10	10	18.96	26.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.97
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.24
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.63
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.37
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.93
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.84
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.