Gene detail

Detailed information of OS493_015006-T1 in Lophelia pertusa

Genomic Location: scaffold_43:2016055...2019958
NR annotation: KAJ7392060.1, Tetratricopeptide repeat protein 25 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PK42	Outer dynein arm-docking complex subunit 4 OS=Bos taurus OX=9913 GN=ODAD4 PE=1 SV=1
Q7ZU45	Outer dynein arm-docking complex subunit 4 OS=Danio rerio OX=7955 GN=odad4 PE=2 SV=2
Q9D4B2	Outer dynein arm-docking complex subunit 4 OS=Mus musculus OX=10090 GN=Odad4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006984 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR040111 all species →	Family	Outer dynein arm-docking complex subunit 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23040 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015006-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015006-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

148.7Max TPM

38.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	26.79	39.18
polyp at pH7 6	18	18	26.08	38.04
coral polyp · control treatment	16	16	49.45	127.20
coral polyp · oil and dispersant treatment	16	16	49.75	148.74
coral polyp · oil treatment	16	16	40.38	65.15
coral polyp · dispersant treatment	16	16	38.60	64.45
Polyp	10	10	38.97	70.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.40
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.81
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.10
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.07
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.57
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.71
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.04
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.81
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.87
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.09
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.84
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	70.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	42.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	41.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	38.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.13
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	36.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	31.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.47

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.