Gene detail

Detailed information of OS493_015054-T1 in Lophelia pertusa

Genomic Location: scaffold_44:97637...106243
NR annotation: KAJ7385484.1, Calcium uptake protein 1, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2VEI2	Calcium uptake protein 1 homolog, mitochondrial OS=Drosophila melanogaster OX=7227 GN=MICU1 PE=2 SV=1
B1H2N3	Calcium uptake protein 1, mitochondrial OS=Xenopus tropicalis OX=8364 GN=micu1 PE=2 SV=2
Q9BPX6	Calcium uptake protein 1, mitochondrial OS=Homo sapiens OX=9606 GN=MICU1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006401 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan
PF13833 all species →	EF-hand_8	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039800 all species →	Family	Calcium uptake protein 1/2/3	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12294 all species →	EF HAND DOMAIN FAMILY A1,A2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0006851 all species →	Biological Process	mitochondrial calcium ion transmembrane transport	Interproscan
GO:0036444 all species →	Biological Process	calcium import into the mitochondrion	Interproscan
GO:0051560 all species →	Biological Process	mitochondrial calcium ion homeostasis	Interproscan
GO:1990246 all species →	Cellular Component	uniplex complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22827	MICU1; calcium uptake protein 1, mitochondrial	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015054-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

54.0Max TPM

12.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.75	18.79
polyp at pH7 6	18	18	13.57	19.63
coral polyp · control treatment	16	16	16.50	53.97
coral polyp · oil and dispersant treatment	16	16	10.34	32.78
coral polyp · oil treatment	16	16	14.66	23.20
coral polyp · dispersant treatment	16	16	7.68	15.03
Polyp	10	9	9.13	17.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.79
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.76
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.35
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.70
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.69
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.60
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.11
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.25
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.59
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.