Gene detail

Detailed information of OS493_015075-T1 in Lophelia pertusa

Genomic Location: scaffold_44:553664...555291
NR annotation: KAJ7385504.1, Reactive oxygen species modulator 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZV8	Reactive oxygen species modulator 1 OS=Bos taurus OX=9913 GN=ROMO1 PE=3 SV=1
P60602	Reactive oxygen species modulator 1 OS=Homo sapiens OX=9606 GN=ROMO1 PE=1 SV=1
P60603	Reactive oxygen species modulator 1 OS=Mus musculus OX=10090 GN=Romo1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011551 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10247 all species →	Romo1	Reactive mitochondrial oxygen species modulator 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018450 all species →	Family	Romo1/Mgr2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28525 all species →	REACTIVE OXYGEN SPECIES MODULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005744 all species →	Cellular Component	TIM23 mitochondrial import inner membrane translocase complex	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0045039 all species →	Biological Process	protein insertion into mitochondrial inner membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015075-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015075-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

96.1Max TPM

36.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	41.36	96.10
polyp at pH7 6	18	18	39.80	53.95
coral polyp · control treatment	16	16	38.33	53.64
coral polyp · oil and dispersant treatment	16	16	26.55	77.23
coral polyp · oil treatment	16	16	37.83	57.99
coral polyp · dispersant treatment	16	16	24.96	34.73
Polyp	10	10	54.55	84.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.02
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.53
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.16
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.98
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.98
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.64
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.36
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.24
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.32
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.46
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.27
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.65
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	84.62
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	63.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	63.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	62.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	61.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	60.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	52.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	41.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	41.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.