Gene detail

Detailed information of OS493_015085-T1 in Lophelia pertusa

Genomic Location: scaffold_44:639528...646669
NR annotation: KAJ7385513.1, Fibronectin type 3 and ankyrin repeat domains protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DAM9	Fibronectin type 3 and ankyrin repeat domains 1 protein OS=Mus musculus OX=10090 GN=Fank1 PE=1 SV=1
Q66H07	Fibronectin type 3 and ankyrin repeat domains 1 protein OS=Rattus norvegicus OX=10116 GN=Fank1 PE=2 SV=1
Q8TC84	Fibronectin type 3 and ankyrin repeat domains protein 1 OS=Homo sapiens OX=9606 GN=FANK1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001535 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24183 all species →	FIBRONECTIN TYPE 3 AND ANKYRIN REPEAT DOMAINS PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0051091 all species →	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24483	FANK1; fibronectin type 3 and ankyrin repeat domains protein 1	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015085-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

163.2Max TPM

8.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.18	7.70
polyp at pH7 6	18	16	5.80	10.71
coral polyp · control treatment	16	16	16.91	163.16
coral polyp · oil and dispersant treatment	16	16	15.10	157.38
coral polyp · oil treatment	16	16	7.00	9.94
coral polyp · dispersant treatment	16	16	2.88	5.07
Polyp	10	9	5.88	13.86

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.97
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	163.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.