Gene detail

Detailed information of OS493_015086-T1 in Lophelia pertusa

Genomic Location: scaffold_44:685927...691367
NR annotation: KAJ7385514.1, hypothetical protein OS493_015086 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7T292	Mitoferrin-2 OS=Danio rerio OX=7955 GN=slc25a28 PE=2 SV=1
Q8R0Z5	Mitoferrin-2 OS=Mus musculus OX=10090 GN=Slc25a28 PE=2 SV=1
Q9NYZ2	Mitoferrin-1 OS=Homo sapiens OX=9606 GN=SLC25A37 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006294 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45758 all species →	MITOFERRIN-1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0015093 all species →	Molecular Function	ferrous iron transmembrane transporter activity	Interproscan
GO:0031966 all species →	Cellular Component	mitochondrial membrane	Interproscan
GO:0048250 all species →	Biological Process	iron import into the mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15113	SLC25A28_37, MFRN; solute carrier family 25 (mitochondrial iron transporter), member 28/37	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015086-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

416.9Max TPM

171.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	159.41	229.25
polyp at pH7 6	18	18	157.09	299.19
coral polyp · control treatment	16	16	186.09	311.04
coral polyp · oil and dispersant treatment	16	16	219.39	416.90
coral polyp · oil treatment	16	16	206.23	365.19
coral polyp · dispersant treatment	16	16	121.60	276.82
Polyp	10	10	145.62	244.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	229.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	224.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	207.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	205.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	190.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	186.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	160.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	160.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	159.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	152.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	128.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	127.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.81
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.04
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	299.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	296.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	185.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	184.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	174.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	170.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	167.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	164.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	151.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	151.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	145.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	145.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	132.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	311.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	270.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	255.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	220.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	198.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	182.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	170.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	166.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	154.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	145.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	138.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.75
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	416.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	412.82
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	336.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	283.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	280.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	244.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	211.57
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	202.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	201.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	180.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.47
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	107.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	365.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	299.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	272.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	256.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	217.62
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	191.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	181.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	172.66
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	167.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	156.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	141.36
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	139.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	117.60
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	276.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	196.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	177.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	157.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	128.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.36
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	244.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	237.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	207.44
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	154.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	133.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	122.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	122.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	80.72
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	77.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	76.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.