Gene detail

Detailed information of OS493_015107-T1 in Lophelia pertusa

Genomic Location: scaffold_44:892300...894455
NR annotation: KAJ7385535.1, ATP synthase subunit e [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q06185	ATP synthase F(0) complex subunit e, mitochondrial OS=Mus musculus OX=10090 GN=Atp5me PE=1 SV=2
P29419	ATP synthase F(0) complex subunit e, mitochondrial OS=Rattus norvegicus OX=10116 GN=Atp5me PE=1 SV=3
Q9MYT8	ATP synthase F(0) complex subunit e, mitochondrial OS=Sus scrofa OX=9823 GN=ATP5ME PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011136 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05680 all species →	ATP-synt_E	ATP synthase E chain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008386 all species →	Family	ATP synthase, F0 complex, subunit E, mitochondrial	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12427 all species →	ATP SYNTHASE E CHAIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000276 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	Interproscan
GO:0005753 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex	Interproscan
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02129	ATPeF0E, ATP5I; F-type H+-transporting ATPase subunit e	-	Thermogenesis	ko04714	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015107-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,746.7Max TPM

517.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	737.41	865.91
polyp at pH7 6	18	18	761.15	1,138.45
coral polyp · control treatment	16	16	339.97	978.61
coral polyp · oil and dispersant treatment	16	16	277.36	872.09
coral polyp · oil treatment	16	16	340.73	518.02
coral polyp · dispersant treatment	16	16	251.54	894.34
Polyp	10	10	1,063.59	1,746.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	865.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	859.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	833.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	827.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	822.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	813.70
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	789.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	780.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	734.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	724.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	717.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	699.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	696.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	683.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	629.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	607.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	596.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	592.89
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,138.45
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	978.20
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	879.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	871.63
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	842.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	827.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	824.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	824.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	705.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	695.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	666.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	657.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	649.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	645.90
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	632.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	628.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	625.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	605.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	978.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	424.61
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	401.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	384.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	335.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	334.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	325.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	303.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	303.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	302.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	279.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	276.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	248.72
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	230.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	178.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	872.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	377.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	354.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	293.10
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	290.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	270.80
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	259.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	246.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	241.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	228.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	189.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	144.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.36
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	518.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	386.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	385.49
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	366.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	355.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	353.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	347.56
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	342.29
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	340.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	317.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	307.14
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	300.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	298.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	289.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	275.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	268.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	894.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	591.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	313.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	293.56
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	233.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	219.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	205.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	178.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	169.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	152.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	143.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,746.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,589.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1,302.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	998.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	966.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	873.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	860.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	793.12
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	769.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	736.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.