Detailed information of OS493_015108-T1 in Lophelia pertusa

Genomic Location: scaffold_44:896937...902029
NR annotation: KAJ7385536.1, palmitoyltransferase [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q3T000Synaptobrevin homolog YKT6 OS=Bos taurus OX=9913 GN=YKT6 PE=2 SV=1
Q7ZUN8Synaptobrevin homolog YKT6 OS=Danio rerio OX=7955 GN=ykt6 PE=2 SV=1
Q9CQW1Synaptobrevin homolog YKT6 OS=Mus musculus OX=10090 GN=Ykt6 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005983 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00957
all species →		SynaptobrevinSynaptobrevinFamilyInterproscan
PF13774
all species →		LonginRegulated-SNARE-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR010908
all species →		DomainLongin domainInterproscan
IPR011012
all species →		Homologous_superfamilyLongin-like domain superfamilyInterproscan
IPR045848
all species →		DomainYKT6, SNARE motifInterproscan
IPR042855
all species →		Domainv-SNARE, coiled-coil homology domainInterproscan
IPR001388
all species →		FamilySynaptobrevin-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45806
all species →		SYNAPTOBREVIN HOMOLOG YKT6Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005484
all species →		Molecular FunctionSNAP receptor activityInterproscan
GO:0005794
all species →		Cellular ComponentGolgi apparatusInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08516YKT6; synaptobrevin homolog YKT6-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_015108-T1 global co-expression network
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