Gene detail

Detailed information of OS493_015114-T1 in Lophelia pertusa

Genomic Location: scaffold_44:948669...956184
NR annotation: KAJ7385542.1, Type I inositol 1,4,5-trisphosphate 5-phosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14642	Inositol polyphosphate-5-phosphatase A OS=Homo sapiens OX=9606 GN=INPP5A PE=1 SV=1
Q29467	Inositol polyphosphate-5-phosphatase A OS=Canis lupus familiaris OX=9615 GN=INPP5A PE=1 SV=1
Q7TNC9	Inositol polyphosphate-5-phosphatase A OS=Mus musculus OX=10090 GN=Inpp5a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003769 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_015114-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR039737 all species →	Family	Type I inositol 1,4,5-trisphosphate 5-phosphatase	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12997 all species →	TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004445 all species →	Molecular Function	inositol-polyphosphate 5-phosphatase activity	Interproscan
GO:0046855 all species →	Biological Process	obsolete inositol phosphate dephosphorylation	Interproscan
GO:0048016 all species →	Biological Process	obsolete inositol phosphate-mediated signaling	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01106	INPP5A; inositol polyphosphate 5-phosphatase INPP5A	EC:3.1.3.56	Insulin signaling pathway	ko04910	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015114-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

107.6Max TPM

49.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	44.44	69.87
polyp at pH7 6	18	18	46.62	68.32
coral polyp · control treatment	16	16	59.02	107.65
coral polyp · oil and dispersant treatment	16	16	66.09	94.99
coral polyp · oil treatment	16	16	53.59	79.20
coral polyp · dispersant treatment	16	16	41.48	61.81
Polyp	10	10	30.47	67.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.87
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.95
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.16
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.22
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.84
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.89
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.98
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	94.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.22
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.09
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.54
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.22
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	67.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	52.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	48.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	40.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.64

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.