Gene detail

Detailed information of OS493_015183-T1 in Lophelia pertusa

Genomic Location: scaffold_44:1760193...1765174
NR annotation: KAJ7385599.1, Protein canopy 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2L6K8	Protein canopy 4 OS=Danio rerio OX=7955 GN=cnpy4 PE=2 SV=1
Q5HZV5	Protein canopy homolog 3 OS=Xenopus tropicalis OX=8364 GN=cnpy3 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009367 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11938 all species →	DUF3456	TLR4 regulator and MIR-interacting MSAP	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021852 all species →	Domain	Domain of unknown function DUF3456	Interproscan

PANTHER

No PANTHER signature was detected for OS493_015183-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_015183-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015183-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015183-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

61.9Max TPM

30.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	30.27	47.87
polyp at pH7 6	18	18	31.80	61.86
coral polyp · control treatment	16	16	36.38	53.04
coral polyp · oil and dispersant treatment	16	16	31.36	45.51
coral polyp · oil treatment	16	16	37.65	53.22
coral polyp · dispersant treatment	16	16	17.65	33.08
Polyp	10	10	24.39	37.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.57
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.08
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.73
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.23
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.35
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.99
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.22
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.86
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.61
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.14
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.75
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	20.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.92
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.03

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.