Gene detail

Detailed information of OS493_015214-T1 in Lophelia pertusa

Genomic Location: scaffold_44:2356126...2392287
NR annotation: KAJ7385626.1, hypothetical protein OS493_015214 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7YWP4	Histidine ammonia-lyase OS=Bos taurus OX=9913 GN=HAL PE=2 SV=1
P42357	Histidine ammonia-lyase OS=Homo sapiens OX=9606 GN=HAL PE=1 SV=1
P35492	Histidine ammonia-lyase OS=Mus musculus OX=10090 GN=Hal PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002235 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00221 all species →	Lyase_aromatic	Aromatic amino acid lyase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR001106 all species →	Family	Aromatic amino acid lyase	Interproscan
IPR022313 all species →	Active_site	Phenylalanine/histidine ammonia-lyases, active site	Interproscan
IPR005921 all species →	Family	Histidine ammonia-lyase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10362 all species →	HISTIDINE AMMONIA-LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004397 all species →	Molecular Function	histidine ammonia-lyase activity	Interproscan
GO:0006548 all species →	Biological Process	L-histidine catabolic process	Interproscan
GO:0016841 all species →	Molecular Function	ammonia-lyase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015214-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015214-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

14.7Max TPM

3.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.07	4.22
polyp at pH7 6	18	15	1.61	3.53
coral polyp · control treatment	16	16	5.25	13.18
coral polyp · oil and dispersant treatment	16	16	4.06	10.00
coral polyp · oil treatment	16	15	5.52	14.69
coral polyp · dispersant treatment	16	16	5.04	11.57
Polyp	10	9	2.82	6.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.53
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.10
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.47
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.