Gene detail

Detailed information of OS493_015215-T1 in Lophelia pertusa

Genomic Location: scaffold_44:2394875...2401118
NR annotation: KAJ7385627.1, hypothetical protein OS493_015215 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97821	Dipeptidyl peptidase 1 OS=Mus musculus OX=10090 GN=Ctsc PE=1 SV=1
Q5RB02	Dipeptidyl peptidase 1 OS=Pongo abelii OX=9601 GN=CTSC PE=2 SV=1
P53634	Dipeptidyl peptidase 1 OS=Homo sapiens OX=9606 GN=CTSC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006180 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08773 all species →	CathepsinC_exc	Cathepsin C exclusion domain	Domain	Interproscan
PF00112 all species →	Peptidase_C1	Papain family cysteine protease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014882 all species →	Domain	Cathepsin C exclusion	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR000169 all species →	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR036496 all species →	Homologous_superfamily	Cathepsin C, exclusion domain superfamily	Interproscan
IPR039412 all species →	Domain	Cathepsin C	Interproscan
IPR025660 all species →	Active_site	Cysteine peptidase, histidine active site	Interproscan
IPR000668 all species →	Domain	Peptidase C1A, papain C-terminal	Interproscan
IPR013128 all species →	Family	Peptidase C1A	Interproscan
IPR025661 all species →	Active_site	Cysteine peptidase, asparagine active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12411 all species →	CYSTEINE PROTEASE FAMILY C1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01275	CTSC; cathepsin C	EC:3.4.14.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015215-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

98.2Max TPM

24.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.73	34.68
polyp at pH7 6	18	18	20.16	36.16
coral polyp · control treatment	16	16	29.58	55.34
coral polyp · oil and dispersant treatment	16	16	27.73	74.22
coral polyp · oil treatment	16	16	27.14	98.22
coral polyp · dispersant treatment	16	16	29.39	66.81
Polyp	10	10	8.29	15.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.20
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.23
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.16
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.23
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.27
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.34
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.68
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.94
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.09
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.82
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.54
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.32
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.59

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.