Gene detail

Detailed information of OS493_015225-T1 in Lophelia pertusa

Genomic Location: scaffold_44:2478453...2486718
NR annotation: KAJ7385636.1, hypothetical protein OS493_015225 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZ08	N-acetyl-D-glucosamine kinase OS=Mus musculus OX=10090 GN=Nagk PE=1 SV=3
Q9UJ70	N-acetyl-D-glucosamine kinase OS=Homo sapiens OX=9606 GN=NAGK PE=1 SV=4
Q3SZM9	N-acetyl-D-glucosamine kinase OS=Bos taurus OX=9913 GN=NAGK PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006370 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01869 all species →	BcrAD_BadFG	BadF/BadG/BcrA/BcrD ATPase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039758 all species →	Family	N-acetyl-D-glucosamine kinase NAGK-like	Interproscan
IPR002731 all species →	Domain	ATPase, BadF/BadG/BcrA/BcrD type	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12862 all species →	BADF TYPE ATPASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0045127 all species →	Molecular Function	N-acetylglucosamine kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00884	NAGK, nagK; N-acetylglucosamine kinase	EC:2.7.1.59	Amino sugar and nucleotide sugar metabolism	ko00520	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015225-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.4Max TPM

15.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.31	20.50
polyp at pH7 6	18	18	16.02	22.90
coral polyp · control treatment	16	16	17.23	32.40
coral polyp · oil and dispersant treatment	16	16	13.92	21.17
coral polyp · oil treatment	16	16	16.04	30.14
coral polyp · dispersant treatment	16	16	15.68	22.61
Polyp	10	10	13.74	21.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.76
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.27
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.25
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.88
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.73
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.60
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.63
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.08
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.77
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.12
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.14
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.07
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.48
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.27
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.