Gene detail

Detailed information of OS493_015306-T1 in Lophelia pertusa

Genomic Location: scaffold_45:1096979...1098811
NR annotation: KAJ7379515.1, Glutaredoxin domain-containing cysteine-rich protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9FLE8	Uncharacterized protein At5g39865 OS=Arabidopsis thaliana OX=3702 GN=At5g39865 PE=2 SV=1
Q9LH89	Uncharacterized protein At3g28850 OS=Arabidopsis thaliana OX=3702 GN=At3g28850 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006682 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00462 all species →	Glutaredoxin	Glutaredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002109 all species →	Domain	Glutaredoxin	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45669 all species →	GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_015306-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015306-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015306-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

20.5Max TPM

5.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	5.75	14.16
polyp at pH7 6	18	13	3.49	8.04
coral polyp · control treatment	16	15	6.91	16.14
coral polyp · oil and dispersant treatment	16	15	4.52	14.28
coral polyp · oil treatment	16	16	5.56	12.19
coral polyp · dispersant treatment	16	16	8.69	20.47
Polyp	10	9	6.08	13.06

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.66
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.88
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.