Gene detail

Detailed information of OS493_015322-T1 in Lophelia pertusa

Genomic Location: scaffold_45:1425997...1459500
NR annotation: KAJ7379531.1, hypothetical protein OS493_015322 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5C9L6	(S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum OX=150095 GN=fCNMT PE=1 SV=1
C3SBS8	(S)-tetrahydroprotoberberine N-methyltransferase OS=Eschscholzia californica OX=3467 GN=TNMT PE=1 SV=1
C3SBW0	Pavine N-methyltransferase OS=Thalictrum flavum subsp. glaucum OX=150095 GN=PavNMT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008909 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02353 all species →	CMAS	Mycolic acid cyclopropane synthetase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43832 all species →	-	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_015322-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00574	cfa; cyclopropane-fatty-acyl-phospholipid synthase	EC:2.1.1.79	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015322-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

27.8Max TPM

14.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.59	21.50
polyp at pH7 6	18	18	14.76	22.60
coral polyp · control treatment	16	16	14.31	23.67
coral polyp · oil and dispersant treatment	16	16	10.07	22.12
coral polyp · oil treatment	16	16	14.16	26.18
coral polyp · dispersant treatment	16	16	13.55	24.34
Polyp	10	10	19.35	27.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.98
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.41
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.64
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.94
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.07
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.68
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.90
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.25
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.96
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.45
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.72
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.09
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.34
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.96
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.03
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	17.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.