Gene detail

Detailed information of OS493_015323-T1 in Lophelia pertusa

Genomic Location: scaffold_45:1459858...1462254
NR annotation: KAJ7379532.1, Transmembrane protein 53 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002812 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05705 all species →	DUF829	Eukaryotic protein of unknown function (DUF829)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008547 all species →	Family	Protein of unknown function DUF829, TMEM53	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12265 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_015323-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_015323-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_015323-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

107.1Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.71	18.53
polyp at pH7 6	18	18	9.20	19.33
coral polyp · control treatment	16	16	9.53	45.66
coral polyp · oil and dispersant treatment	16	16	9.15	35.13
coral polyp · oil treatment	16	16	7.95	12.89
coral polyp · dispersant treatment	16	16	12.66	107.10
Polyp	10	10	10.59	17.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.49
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.